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Flagship Pioneering

Conceives, creates, and builds life science platform companies

Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
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flagshippioneering.com ↗
Jobs Hiring Discussion

Company facts

Founded
1999
Employees
500
Headquarters
United States
Type
Private
Funding
Corporate Round · $3.6B · 2024
Subsidiaries
Moderna, Indigo Agriculture, Generate Biomedicines, Tessera Therapeutics, Sana Biotechnology, Quotient Therapeutics, ProFound Therapeutics, Extuitive
12 jobs
Flagship Pioneering
10 views 3 days ago

Lead Data Engineer

Open 46d North AmericaLead Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

Flagship Pioneering is hiring a Lead Data Engineer, a senior individual contributor on its Scientific Cloud IT team, to modernize data infrastructure and platforms: building complex pipelines, leading data warehouse/lakehouse implementations, setting engineering standards, and troubleshooting on AWS. Core stack includes Python, SQL, Dagster, dbt, Spark, Iceberg, and AWS services, with generative A

Agile AI Analytics Athena Automation +30 skills
128K – 176K $
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Flagship Pioneering
11 views 3 days ago

Sr. Research Systems Analyst

Open 40d North AmericaSenior Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

The Sr. Research Systems Analyst administers and configures life sciences research platforms (Benchling, CDD Vault, Quilt, AWS, Code Ocean, Seqera) for Flagship Pioneering's portfolio companies — standing up systems for new startups, providing Tier 2/3 support, documenting and training users, and guiding researchers on using each platform's AI features.

AI Athena Automation AWS Bioinformatics +15 skills
108K – 148K $
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Flagship Pioneering
1 views 3 days ago

Director, Scientific Cloud Engineering

Open 26d Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.

ABOUT FLAGSHIP PIONEERING Flagship Pioneering is a life sciences innovation enterprise that invents and builds transformative companies. Since its founding in 2000, Flagship has originated more than 100 ventures,…

AI Automation AWS Azure Bioinformatics +39 skills
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Flagship Pioneering
5 views 2 weeks ago

Senior / Principal Data Infrastructure Engineer

North AmericaPrincipal Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

A hands-on senior individual contributor who designs, builds, and owns the proteomics data platform at Expedition Medicines (a Flagship-backed biotech) — writing production pipelines, cloud infrastructure, and orchestration that turn mass spectrometry data into ML-ready datasets for scientists and ML teams. Core stack: Python/SQL, AWS, Kubernetes, Terraform, Flyte, and warehouse/lakehouse tools.

Agentic AI AI Airflow API Automation +29 skills
108K – 209K $
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Flagship Pioneering
4 views 2 weeks ago

Principal / Senior Software Engineer

Open 83d Principal Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

Build and lead the full-stack of an AI-powered wellbeing platform, shipping customer-facing features while collaborating with ML researchers and product teams using Python, AWS, and modern DevOps practices.

AI Analytics AWS Ccpa CDK +13 skills
108K – 209K $
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Flagship Pioneering
8 views 2 weeks ago

Pioneering Intelligence: Data Science Co-Op (Embedded Science Team)

Open 43d HybridNorth AmericaInternship Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

A six-month, full-time onsite co-op (open only to current Northeastern University students) with Flagship Pioneering's Pioneering Intelligence team in Cambridge, MA, building machine learning and computational science solutions for life sciences — generative biomolecular models, agentic systems, and biophysical simulation using Python, PyTorch, and JAX.

Agentic AI AI AWS Azure Ccpa +11 skills
25 – 35 $ / hr
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Flagship Pioneering
13 views 2 weeks ago

Terrana: Bioinformatics Co-Op: Computational Biology & Data Science

Open 21d HybridNorth AmericaInternship Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

A 6-month, full-time, in-office co-op in Cambridge, MA (open only to current Northeastern University students) with Terrana Biosciences, a Flagship Pioneering biotech venture. The co-op processes and interprets NGS data (RNA-seq/small RNA-seq), builds and automates bioinformatics pipelines, and performs QC, alignment, and differential expression analysis using Python/R and tools like Snakemake, Ne

AI Automation AWS Bioinformatics Ccpa +15 skills
25 – 35 $ / hr
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Flagship Pioneering
17 views 2 weeks ago

Principal Software Engineer - Agentic Platform

Open 130d North AmericaPrincipal Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

The Principal Software Engineer will build and own a durable orchestration platform for agentic AI systems, enabling long-running, multi-agent scientific workflows. The role focuses on architecting scalable, reliable infrastructure on AWS to transition AI research prototypes into production-grade systems.

Agentic AI AI Anthropic API AutoGen +23 skills
188K – 258K $
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Flagship Pioneering
7 views 2 weeks ago

Senior Scientist, Machine Learning

Open 89d North AmericaSenior Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

The Senior Scientist will join an early-stage biotech startup to develop generative chemistry and molecular models for small molecule drug discovery. The role involves training and validating models, curating datasets, and collaborating with experimental teams to build a novel platform technology.

AI Ccpa Cloud Fine Tuning Gdpr +3 skills
168K – 259K $
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Flagship Pioneering
2 weeks ago

Director, Data & Technology

Open 82d North America Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

Lead data engineering, IT, and AI/ML deployment to build FAIR data systems and production workflows for an agricultural biotech startup.

AI Ai Enablement API Automation AWS +21 skills
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Flagship Pioneering
15 views 2 weeks ago

Senior Automation Engineer, Platform Biology

Open 78d WorldwideSenior Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

Build and maintain automated lab workcells that run high-throughput biology experiments, integrating robotics, Python/C# scripts, and data systems to scale drug-discovery workflows.

AI API Authentication Automation AWS +12 skills
108K – 171K $
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Flagship Pioneering
7 views 2 weeks ago

Senior Director / Vice President, Machine Learning (Generative Chemistry)

Open 26d North AmericaC-level Licensed UK sponsor — This employer appears on the GOV.UK register of licensed sponsors for the Skilled Worker and related work routes. The licence belongs to the employer and is not a commitment to sponsor this role.H-1B sponsor history — This employer has had H-1B petitions approved by USCIS in the last five fiscal years, per the USCIS H-1B Employer Data Hub. The approval belongs to the employer and is not a commitment to sponsor this role.
United States

Lead AI/ML and cheminformatics for FL117, Flagship Pioneering's stealth AI x bio venture, building multi-modal generative models for biomolecular and drug design. Day to day: own method/platform development (LLM/agentic workflows, molecular modeling), manage the computational team across AI/ML, simulations, and cheminformatics, and drive benchmarking and production scaling with Python/PyTorch on A

Agentic AI AI Airflow Automation AWS +34 skills
279K – 413K $
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