Director of Payroll (29913)

Physician Affiliate Group of New York (PAGNY), a tax-exempt organization affiliated with NYC Health + Hospitals, is adding a Director of Payroll. PAGNY is one of the largest physician groups in New York State and directly employs nearly 4,000 physicians and allied health professionals who serve seven of New York City’s public hospitals, numerous public health community-based practices, and the city’s Correctional Health Service.

The mission of NYC Health + Hospitals is to extend equally to all New Yorkers, regardless of the ability to pay, comprehensive health services of the highest quality in an atmosphere of humane care, dignity, and respect. Their Values are built on a foundation of social and racial equity and has established the ICARE standards for all staff.

NYC Health + Hospitals is the nation’s largest municipal health care delivery system in the United States. Dedicated to providing the highest quality health care services to all New Yorkers with compassion, dignity and respect, and regardless of immigration status or ability to pay.

We are seeking a Director of Payroll to lead and oversee the payroll function, including daily operations, compliance, reporting, and process improvement. This permanent leadership role is responsible for ensuring payroll is accurate, compliant, and efficient. The role will address current process gaps, optimize system configuration, and streamline payroll codes and structures to improve accuracy, efficiency, and scalability. The payroll environment is primarily New York–based, with multi-state requirements as needed, including remote employees and tax jurisdiction considerations.

Opportunity Details:

Payroll Operations

• Oversee end-to-end payroll operations.
• Ensure accurate, timely, and reliable payroll processing.
• Monitor payroll performance, issues, and operational risks.
• Communicate effectively with internal and external stakeholders.
• Implement cross-training to strengthen team coverage and continuity.

Compliance & Payroll Tax Reporting

• Ensure compliance with federal, New York State, and local payroll tax regulations.
• Oversee multi-state payroll requirements, including remote employees, work location changes, and tax withholding.
• Manage payroll tax filings, reconciliations, and year-end reporting, including W-2s, 941s, and state filings.
• Monitor regulatory changes and implement necessary updates.

Leadership

• Lead, develop, and mentor the payroll team to drive accountability and continuous improvement.
• Establish best practices and standard operating procedures.
• Provide oversight and guidance on payroll processes.

Reconciliations & Financial Oversight

• Review payroll outputs for accuracy and reasonableness prior to processing.
• Partner with internal stakeholders on payroll-related matters.
• Identify discrepancies or trends that may affect financial reporting or workforce costs.

Controls & Risk Management

• Establish and maintain internal controls over payroll processing.
• Ensure audit readiness with appropriate documentation.
• Mitigate risks related to overpayments, misclassification, and compliance gaps.

Systems & Data Management

• Oversee payroll systems, including Paylocity, Workday, ADP, and Paycom.
• Optimize system configuration, including pay codes, earnings and deductions structures, department setup, and reporting.
• Maintain data accuracy through validation and review processes.
• Support system enhancements that reduce manual effort while maintaining strong controls.