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Payroll and HR Specialist

Janus of Santa Cruz is seeking a detail-oriented and mission-driven Payroll and HR Specialist to manage employee benefits administration and payroll operations. This role ensures accurate payroll processing, compliance with employment laws, and delivery of high-quality benefits support to employees.


The ideal candidate thrives in a collaborative, service-oriented environment and is committed to supporting a nonprofit workforce and advancing Janus’ mission.


Key Responsibilities

Payroll Administration

  • Process twice-monthly payroll accurately and on time, including earnings, deductions, and adjustments
  • Maintain payroll records and ensure compliance with federal, state, and local regulations
  • Manage timekeeping systems and review timesheets for accuracy
  • Review and audit timesheets, leave balances, payroll changes, and deductions prior to processing
  • Process off-cycle payrolls, retroactive payments, and final paychecks
  • Manage payroll tax filings, W-2s, and year-end reporting
  • Maintain payroll system configurations (earnings codes, deductions, accruals, etc.)
  • Respond to employee payroll inquiries in a timely and professional manner
  • Partner with Finance to reconcile payroll-related accounts
  • Assist with audits, reporting, and continuous process improvements

Benefits Administration

  • Administer employee benefits programs (medical, dental, vision, retirement, and leave plans)
  • Coordinate and manage open enrollment
  • Serve as the primary point of contact for benefits-related questions and issue resolution
  • Process benefit enrollments, changes, and terminations
  • Maintain accurate benefits data in HRIS systems
  • Reconcile monthly benefit invoices and payroll deductions
  • Ensure compliance with ACA, COBRA, HIPAA, and other regulations
  • Coordinate and administer Leave of Absence (LOA) programs, including tracking and documentation

Compliance & Reporting

  • Ensure compliance with labor laws, nonprofit regulations, and internal policies
  • Prepare and maintain payroll and benefits reports
  • Support audits and regulatory reporting requirements

Employee Support & HR Operations

  • Provide exceptional customer service to employees regarding payroll, benefits, and HR policies
  • Support onboarding processes related to payroll and benefits setup
  • Contribute to HR initiatives, system updates, and process improvements

See also

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